HL_4YPB_095
3D structure
- PDB id
- 4YPB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Precleavage 70S structure of the P. vulgaris HigB DeltaH92 toxin bound to the AAA codon
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.4 Å
Loop
- Sequence
- CGCAAGGG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4YPB_095 not in the Motif Atlas
- Homologous match to HL_7RQB_056
- Geometric discrepancy: 0.0809
- The information below is about HL_7RQB_056
- Detailed Annotation
- Pseudoknot geometry
- Broad Annotation
- No text annotation
- Motif group
- HL_12078.4
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 31
Unit IDs
4YPB|1|RA|C|2324
4YPB|1|RA|G|2325
4YPB|1|RA|C|2326
4YPB|1|RA|A|2327
4YPB|1|RA|A|2328
4YPB|1|RA|G|2329
4YPB|1|RA|G|2330
4YPB|1|RA|G|2331
Current chains
- Chain RA
- 23S rRNA
Nearby chains
- Chain QV
- Transfer RNA; tRNA
- Chain R0
- 50S ribosomal protein L27
- Chain R6
- 50S ribosomal protein L33
- Chain RG
- 50S ribosomal protein L5
- Chain RQ
- 50S ribosomal protein L16
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