HL_4YPB_107

3D structure

PDB id

4YPB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Precleavage 70S structure of the P. vulgaris HigB DeltaH92 toxin bound to the AAA codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GAAGACCAC

Length

9 nucleotides

Bulged bases

4YPB|1|RA|A|2820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4YPB_107 not in the Motif Atlas

Homologous match to HL_7RQB_068

Geometric discrepancy: 0.082

The information below is about HL_7RQB_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.1

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

4YPB|1|RA|G|2819
4YPB|1|RA|A|2820
4YPB|1|RA|A|2821
4YPB|1|RA|G|2822
4YPB|1|RA|A|2823
4YPB|1|RA|C|2824
4YPB|1|RA|C|2825
4YPB|1|RA|A|2826
4YPB|1|RA|C|2827

Current chains

Chain RA

23S rRNA

Nearby chains

Chain RE

50S ribosomal protein L3

Chain RR

50S ribosomal protein L17