HL_4YPB_108

3D structure

PDB id

4YPB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Precleavage 70S structure of the P. vulgaris HigB DeltaH92 toxin bound to the AAA codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CGCGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4YPB_108 not in the Motif Atlas

Homologous match to HL_7RQB_069

Geometric discrepancy: 0.075

The information below is about HL_7RQB_069

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_35490.2

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

299

Unit IDs

4YPB|1|RA|C|2856
4YPB|1|RA|G|2857
4YPB|1|RA|C|2858
4YPB|1|RA|G|2859
4YPB|1|RA|A|2860
4YPB|1|RA|G|2861

Current chains

Chain RA

23S rRNA

Nearby chains

Chain RT

50S ribosomal protein L19