HL_4YPB_118

3D structure

PDB id

4YPB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Precleavage 70S structure of the P. vulgaris HigB DeltaH92 toxin bound to the AAA codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CACUGAGACACGGG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4YPB_118 not in the Motif Atlas

Homologous match to HL_4LFB_008

Geometric discrepancy: 0.076

The information below is about HL_4LFB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.3

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

4YPB|1|XA|C|320
4YPB|1|XA|A|321
4YPB|1|XA|C|322
4YPB|1|XA|U|323
4YPB|1|XA|G|324
4YPB|1|XA|A|325
4YPB|1|XA|G|326
4YPB|1|XA|A|327
4YPB|1|XA|C|328
4YPB|1|XA|A|329
4YPB|1|XA|C|330
4YPB|1|XA|G|331
4YPB|1|XA|G|332
4YPB|1|XA|G|333

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XP

30S ribosomal protein S16

Chain XT

30S ribosomal protein S20