HL_4YPB_171

3D structure

PDB id

4YPB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Precleavage 70S structure of the P. vulgaris HigB DeltaH92 toxin bound to the AAA codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

UGAAAAG

Length

7 nucleotides

Bulged bases

4YPB|1|YA|A|781, 4YPB|1|YA|A|784

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4YPB_171 not in the Motif Atlas

Geometric match to HL_1P6V_001

Geometric discrepancy: 0.3115

The information below is about HL_1P6V_001

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_53890.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

15

Unit IDs

4YPB|1|YA|U|779
4YPB|1|YA|G|780
4YPB|1|YA|A|781
4YPB|1|YA|A|782
4YPB|1|YA|A|783
4YPB|1|YA|A|784
4YPB|1|YA|G|785

Current chains

Chain YA

23S rRNA

Nearby chains

Chain YD

50S ribosomal protein L2