HL_4YPB_184

3D structure

PDB id

4YPB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Precleavage 70S structure of the P. vulgaris HigB DeltaH92 toxin bound to the AAA codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CAUGGACG

Length

8 nucleotides

Bulged bases

4YPB|1|YA|U|1454

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4YPB_184 not in the Motif Atlas

Geometric match to HL_7RQB_037

Geometric discrepancy: 0.1078

The information below is about HL_7RQB_037

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_32426.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

1

Unit IDs

4YPB|1|YA|C|1451
4YPB|1|YA|A|1453
4YPB|1|YA|U|1454
4YPB|1|YA|G|1455
4YPB|1|YA|G|1456
4YPB|1|YA|A|1457
4YPB|1|YA|C|1458
4YPB|1|YA|G|1459

Current chains

Chain YA

23S rRNA

Nearby chains

Chain YR

50S ribosomal protein L17