HL_4YPB_188
3D structure
- PDB id
- 4YPB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Precleavage 70S structure of the P. vulgaris HigB DeltaH92 toxin bound to the AAA codon
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.4 Å
Loop
- Sequence
- CGACACAG
- Length
- 8 nucleotides
- Bulged bases
- 4YPB|1|YA|A|1614, 4YPB|1|YA|A|1616, 4YPB|1|YA|A|1618
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4YPB_188 not in the Motif Atlas
- Homologous match to HL_7RQB_040
- Geometric discrepancy: 0.0723
- The information below is about HL_7RQB_040
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_64430.2
- Basepair signature
- cWW-F-F-F
- Number of instances in this motif group
- 13
Unit IDs
4YPB|1|YA|C|1612
4YPB|1|YA|G|1613
4YPB|1|YA|A|1614
4YPB|1|YA|C|1615
4YPB|1|YA|A|1616
4YPB|1|YA|C|1617
4YPB|1|YA|A|1618
4YPB|1|YA|G|1619
Current chains
- Chain YA
- 23S rRNA
Nearby chains
- Chain Y7
- 50S ribosomal protein L34
- Chain YW
- 50S ribosomal protein L22
Coloring options: