HL_4YPB_188

3D structure

PDB id

4YPB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Precleavage 70S structure of the P. vulgaris HigB DeltaH92 toxin bound to the AAA codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CGACACAG

Length

8 nucleotides

Bulged bases

4YPB|1|YA|A|1614, 4YPB|1|YA|A|1616, 4YPB|1|YA|A|1618

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4YPB_188 not in the Motif Atlas

Homologous match to HL_7RQB_040

Geometric discrepancy: 0.0723

The information below is about HL_7RQB_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64430.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

13

Unit IDs

4YPB|1|YA|C|1612
4YPB|1|YA|G|1613
4YPB|1|YA|A|1614
4YPB|1|YA|C|1615
4YPB|1|YA|A|1616
4YPB|1|YA|C|1617
4YPB|1|YA|A|1618
4YPB|1|YA|G|1619

Current chains

Chain YA

23S rRNA

Nearby chains

Chain Y7

50S ribosomal protein L34

Chain YW

50S ribosomal protein L22