HL_4YPB_223
3D structure
- PDB id
- 4YPB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Precleavage 70S structure of the P. vulgaris HigB DeltaH92 toxin bound to the AAA codon
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.4 Å
Loop
- Sequence
- GGCUCAUAACC
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4YPB_223 not in the Motif Atlas
- Homologous match to HL_4WZD_209
- Geometric discrepancy: 0.2334
- The information below is about HL_4WZD_209
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4YPB|1|QW|G|30
4YPB|1|QW|G|31
4YPB|1|QW|C|32
4YPB|1|QW|U|33
4YPB|1|QW|C|34
4YPB|1|QW|A|35
4YPB|1|QW|U|36
4YPB|1|QW|A|37
4YPB|1|QW|A|38
4YPB|1|QW|C|39
4YPB|1|QW|C|40
Current chains
- Chain QW
- tRNA fMet
Nearby chains
- Chain QA
- Small subunit ribosomal RNA; SSU rRNA
- Chain QG
- 30S ribosomal protein S7
- Chain QK
- 30S ribosomal protein S11
- Chain QV
- Transfer RNA; tRNA
- Chain QX
- messenger RNA
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