HL_4YVI_002

3D structure

PDB id

4YVI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of H. influenzae TrmD in complex with sinefungin and tRNA

Experimental method

X-RAY DIFFRACTION

Resolution

3.01 Å

Loop

Sequence

ACUCUGGAU

Length

9 nucleotides

Bulged bases

4YVI|1|C|U|33, 4YVI|1|C|G|37

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4YVI_002 not in the Motif Atlas

Geometric match to HL_2ZZM_002

Geometric discrepancy: 0.1772

The information below is about HL_2ZZM_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33487.1

Basepair signature

cWW-cWW

Number of instances in this motif group

2

Unit IDs

4YVI|1|C|A|31
4YVI|1|C|C|32
4YVI|1|C|U|33
4YVI|1|C|C|34
4YVI|1|C|U|35
4YVI|1|C|G|36
4YVI|1|C|G|37
4YVI|1|C|A|38
4YVI|1|C|U|39

Current chains

Chain C

tRNA

Nearby chains

Chain A

tRNA (guanine-N(1)-)-methyltransferase

Chain B

tRNA (guanine-N(1)-)-methyltransferase