HL_4YYE_004

3D structure

PDB id

4YYE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the yeast mitochondrial threonyl-tRNA synthetase (MST1) in complex with the canonical tRNAThr and threonyl sulfamoyl adenylate

Experimental method

X-RAY DIFFRACTION

Resolution

2.3 Å

Loop

Sequence

UAAGGUAGA*G

Length

10 nucleotides

Bulged bases

4YYE|1|D|G|18

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4YYE_004 not in the Motif Atlas

Homologous match to HL_4YCP_001

Geometric discrepancy: 0.2732

The information below is about HL_4YCP_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_66853.7

Basepair signature

cWW-cWS-F-cSH

Number of instances in this motif group

11

Unit IDs

4YYE|1|D|U|13
4YYE|1|D|A|14
4YYE|1|D|A|15
4YYE|1|D|G|18
4YYE|1|D|G|19
4YYE|1|D|U|20
4YYE|1|D|A|21
4YYE|1|D|G|22
4YYE|1|D|A|21
*
4YYE|1|D|G|22

Current chains

Chain D

tRNA

Nearby chains

Chain B

Threonine--tRNA ligase, mitochondrial