HL_4YZV_064

3D structure

PDB id

4YZV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Precleavage 70S structure of the P. vulgaris HigB deltaH92 toxin bound to the ACA codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CUUAGAAGCAG

Length

11 nucleotides

Bulged bases

4YZV|1|RA|A|1070

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4YZV_064 not in the Motif Atlas

Homologous match to HL_5J7L_161

Geometric discrepancy: 0.29

The information below is about HL_5J7L_161

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19210.3

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

4YZV|1|RA|C|1064
4YZV|1|RA|U|1065
4YZV|1|RA|U|1066
4YZV|1|RA|A|1067
4YZV|1|RA|G|1068
4YZV|1|RA|A|1069
4YZV|1|RA|A|1070
4YZV|1|RA|G|1071
4YZV|1|RA|C|1072
4YZV|1|RA|A|1073
4YZV|1|RA|G|1074

Current chains

Chain RA

23S rRNA

Nearby chains