HL_4YZV_087

3D structure

PDB id

4YZV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Precleavage 70S structure of the P. vulgaris HigB deltaH92 toxin bound to the ACA codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CUCCGG

Length

6 nucleotides

Bulged bases

4YZV|1|RA|C|2145

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4YZV_087 not in the Motif Atlas

Homologous match to HL_8VTW_050

Geometric discrepancy: 0.5759

The information below is about HL_8VTW_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4YZV|1|RA|C|2143
4YZV|1|RA|U|2144
4YZV|1|RA|C|2145
4YZV|1|RA|C|2146
4YZV|1|RA|G|2147
4YZV|1|RA|G|2148

Current chains

Chain RA

23S rRNA

Nearby chains

Chain QK

30S ribosomal protein S11