HL_4YZV_108

3D structure

PDB id

4YZV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Precleavage 70S structure of the P. vulgaris HigB deltaH92 toxin bound to the ACA codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UUUGAUCCUGG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4YZV_108 not in the Motif Atlas

Homologous match to HL_4LFB_001

Geometric discrepancy: 0.069

The information below is about HL_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89881.5

Basepair signature

cWW-tHW-F-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

4YZV|1|XA|U|12
4YZV|1|XA|U|13
4YZV|1|XA|U|14
4YZV|1|XA|G|15
4YZV|1|XA|A|16
4YZV|1|XA|U|17
4YZV|1|XA|C|18
4YZV|1|XA|C|19
4YZV|1|XA|U|20
4YZV|1|XA|G|21
4YZV|1|XA|G|22

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XE

30S ribosomal protein S5