HL_4YZV_136

3D structure

PDB id

4YZV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Precleavage 70S structure of the P. vulgaris HigB deltaH92 toxin bound to the ACA codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CUGCAACCCG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4YZV_136 not in the Motif Atlas

Homologous match to HL_4LFB_029

Geometric discrepancy: 0.0953

The information below is about HL_4LFB_029

Detailed Annotation

T-loop with 3 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_02887.3

Basepair signature

cWW-tWH-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

4YZV|1|XA|C|1314
4YZV|1|XA|U|1315
4YZV|1|XA|G|1316
4YZV|1|XA|C|1317
4YZV|1|XA|A|1318
4YZV|1|XA|A|1319
4YZV|1|XA|C|1320
4YZV|1|XA|C|1321
4YZV|1|XA|C|1322
4YZV|1|XA|G|1323

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XM

30S ribosomal protein S13

Chain XN

30S ribosomal protein S14 type Z

Chain XS

30S ribosomal protein S19