HL_4YZV_139

3D structure

PDB id

4YZV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Precleavage 70S structure of the P. vulgaris HigB deltaH92 toxin bound to the ACA codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGGAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4YZV_139 not in the Motif Atlas

Homologous match to HL_4LFB_032

Geometric discrepancy: 0.0736

The information below is about HL_4LFB_032

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

4YZV|1|XA|C|1515
4YZV|1|XA|G|1516
4YZV|1|XA|G|1517
4YZV|1|XA|A|1518
4YZV|1|XA|A|1519
4YZV|1|XA|G|1520

Current chains

Chain XA

16S rRNA

Nearby chains

Chain YA

Large subunit ribosomal RNA; LSU rRNA