HL_4YZV_152

3D structure

PDB id

4YZV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Precleavage 70S structure of the P. vulgaris HigB deltaH92 toxin bound to the ACA codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CAGAG

Length

5 nucleotides

Bulged bases

4YZV|1|YA|G|321, 4YZV|1|YA|A|322

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4YZV_152 not in the Motif Atlas

Homologous match to HL_7RQB_011

Geometric discrepancy: 0.0793

The information below is about HL_7RQB_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_70546.1

Basepair signature

cWW-F

Number of instances in this motif group

18

Unit IDs

4YZV|1|YA|C|319
4YZV|1|YA|A|320
4YZV|1|YA|G|321
4YZV|1|YA|A|322
4YZV|1|YA|G|323

Current chains

Chain YA

23S rRNA

Nearby chains

Chain YF

50S ribosomal protein L4