HL_4YZV_153

3D structure

PDB id

4YZV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Precleavage 70S structure of the P. vulgaris HigB deltaH92 toxin bound to the ACA codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GUGAAAGCC

Length

9 nucleotides

Bulged bases

4YZV|1|YA|G|329, 4YZV|1|YA|A|330, 4YZV|1|YA|A|331

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4YZV_153 not in the Motif Atlas

Homologous match to HL_7RQB_012

Geometric discrepancy: 0.0842

The information below is about HL_7RQB_012

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_08002.9

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

19

Unit IDs

4YZV|1|YA|G|327
4YZV|1|YA|U|328
4YZV|1|YA|G|329
4YZV|1|YA|A|330
4YZV|1|YA|A|331
4YZV|1|YA|A|332
4YZV|1|YA|G|333
4YZV|1|YA|C|334
4YZV|1|YA|C|335

Current chains

Chain YA

23S rRNA

Nearby chains

Chain YF

50S ribosomal protein L4

Chain YY

50S ribosomal protein L24