HL_4YZV_154

3D structure

PDB id

4YZV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Precleavage 70S structure of the P. vulgaris HigB deltaH92 toxin bound to the ACA codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GUUCGUGGAGC

Length

11 nucleotides

Bulged bases

4YZV|1|YA|G|386

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4YZV_154 not in the Motif Atlas

Homologous match to HL_7RQB_013

Geometric discrepancy: 0.0566

The information below is about HL_7RQB_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.4

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

4YZV|1|YA|G|382
4YZV|1|YA|U|383
4YZV|1|YA|U|384
4YZV|1|YA|C|385
4YZV|1|YA|G|386
4YZV|1|YA|U|387
4YZV|1|YA|G|388
4YZV|1|YA|G|389
4YZV|1|YA|A|390
4YZV|1|YA|G|391
4YZV|1|YA|C|392

Current chains

Chain YA

23S rRNA

Nearby chains

Chain Y1

50S ribosomal protein L28

Chain YP

50S ribosomal protein L15