HL_4YZV_177
3D structure
- PDB id
- 4YZV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Precleavage 70S structure of the P. vulgaris HigB deltaH92 toxin bound to the ACA codon
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- GUUAAUAUUC
- Length
- 10 nucleotides
- Bulged bases
- 4YZV|1|YA|U|1396, 4YZV|1|YA|U|1397
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4YZV_177 not in the Motif Atlas
- Homologous match to HL_7RQB_036
- Geometric discrepancy: 0.0675
- The information below is about HL_7RQB_036
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_69023.2
- Basepair signature
- cWW-tWH-F-F-F-F
- Number of instances in this motif group
- 16
Unit IDs
4YZV|1|YA|G|1389
4YZV|1|YA|U|1390
4YZV|1|YA|U|1391
4YZV|1|YA|A|1392
4YZV|1|YA|A|1393
4YZV|1|YA|U|1394
4YZV|1|YA|A|1395
4YZV|1|YA|U|1396
4YZV|1|YA|U|1397
4YZV|1|YA|C|1398
Current chains
- Chain YA
- 23S rRNA
Nearby chains
- Chain YX
- 50S ribosomal protein L23
Coloring options: