3D structure

PDB id
4YZV (explore in PDB, NAKB, or RNA 3D Hub)
Description
Precleavage 70S structure of the P. vulgaris HigB deltaH92 toxin bound to the ACA codon
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
CGACACAG
Length
8 nucleotides
Bulged bases
4YZV|1|YA|A|1614, 4YZV|1|YA|A|1616, 4YZV|1|YA|A|1618
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_4YZV_182 not in the Motif Atlas
Homologous match to HL_7RQB_040
Geometric discrepancy: 0.0851
The information below is about HL_7RQB_040
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_64430.2
Basepair signature
cWW-F-F-F
Number of instances in this motif group
13

Unit IDs

4YZV|1|YA|C|1612
4YZV|1|YA|G|1613
4YZV|1|YA|A|1614
4YZV|1|YA|C|1615
4YZV|1|YA|A|1616
4YZV|1|YA|C|1617
4YZV|1|YA|A|1618
4YZV|1|YA|G|1619

Current chains

Chain YA
23S rRNA

Nearby chains

Chain Y7
50S ribosomal protein L34
Chain YW
50S ribosomal protein L22

Coloring options:


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