HL_4Z3S_189

3D structure

PDB id

4Z3S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic A201A, mRNA and three tRNAs in the A, P and E sites at 2.65A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.65 Å

Loop

Sequence

CACUGAGACACGGG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4Z3S_189 not in the Motif Atlas

Homologous match to HL_4LFB_008

Geometric discrepancy: 0.0841

The information below is about HL_4LFB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.3

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

4Z3S|1|2a|C|320
4Z3S|1|2a|A|321
4Z3S|1|2a|C|322
4Z3S|1|2a|U|323
4Z3S|1|2a|G|324
4Z3S|1|2a|A|325
4Z3S|1|2a|G|326
4Z3S|1|2a|A|327
4Z3S|1|2a|C|328
4Z3S|1|2a|A|329
4Z3S|1|2a|C|330
4Z3S|1|2a|G|331
4Z3S|1|2a|G|332
4Z3S|1|2a|G|333

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2p

30S ribosomal protein S16

Chain 2t

30S ribosomal protein S20