3D structure

PDB id
4Z3S (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic A201A, mRNA and three tRNAs in the A, P and E sites at 2.65A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.65 Å

Loop

Sequence
G(5MU)(PSU)CGAUUC
Length
9 nucleotides
Bulged bases
None detected
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_4Z3S_222 not in the Motif Atlas
Homologous match to HL_5WWT_002
Geometric discrepancy: 0.2845
The information below is about HL_5WWT_002
Detailed Annotation
T-loop with 2 stacked bulged bases
Broad Annotation
T-loop
Motif group
HL_33597.1
Basepair signature
cWW-tWH-F-F-F-F-F
Number of instances in this motif group
96

Unit IDs

4Z3S|1|2y|G|53
4Z3S|1|2y|5MU|54
4Z3S|1|2y|PSU|55
4Z3S|1|2y|C|56
4Z3S|1|2y|G|57
4Z3S|1|2y|A|58
4Z3S|1|2y|U|59
4Z3S|1|2y|U|60
4Z3S|1|2y|C|61

Current chains

Chain 2y
A/E-site tRNAs

Nearby chains

Chain 2A
Large subunit ribosomal RNA; LSU rRNA

Coloring options:


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