HL_4Z8C_026

3D structure

PDB id

4Z8C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome bound to translation inhibitor oncocin

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CCCACCAG

Length

8 nucleotides

Bulged bases

4Z8C|1|1A|C|934

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4Z8C_026 not in the Motif Atlas

Geometric match to HL_5AMQ_001

Geometric discrepancy: 0.3086

The information below is about HL_5AMQ_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_48417.6

Basepair signature

cWW-F-F

Number of instances in this motif group

22

Unit IDs

4Z8C|1|1A|C|930
4Z8C|1|1A|C|931
4Z8C|1|1A|C|932
4Z8C|1|1A|A|933
4Z8C|1|1A|C|934
4Z8C|1|1A|C|935
4Z8C|1|1A|A|936
4Z8C|1|1A|G|937

Current chains

Chain 1A

23S ribosomal RNA

Nearby chains

Chain 1m

30S ribosomal protein S13