HL_4Z8C_123

3D structure

PDB id

4Z8C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome bound to translation inhibitor oncocin

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CGAACAG

Length

7 nucleotides

Bulged bases

4Z8C|1|2A|C|669

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4Z8C_123 not in the Motif Atlas

Homologous match to HL_7RQB_021

Geometric discrepancy: 0.235

The information below is about HL_7RQB_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_35490.2

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

299

Unit IDs

4Z8C|1|2A|C|665
4Z8C|1|2A|G|666
4Z8C|1|2A|A|667
4Z8C|1|2A|A|668
4Z8C|1|2A|C|669
4Z8C|1|2A|A|670
4Z8C|1|2A|G|671

Current chains

Chain 2A

23S ribosomal RNA

Nearby chains

Chain 26

50S ribosomal protein L33

Chain 28

50S ribosomal protein L35

Chain 2P

50S ribosomal protein L15