HL_4Z8C_152

3D structure

PDB id

4Z8C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome bound to translation inhibitor oncocin

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GGUAAGUUC

Length

9 nucleotides

Bulged bases

4Z8C|1|2A|U|1976

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4Z8C_152 not in the Motif Atlas

Homologous match to HL_7RQB_049

Geometric discrepancy: 0.0551

The information below is about HL_7RQB_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_51824.1

Basepair signature

cWW-F-F-tSH-F-F

Number of instances in this motif group

8

Unit IDs

4Z8C|1|2A|G|1970
4Z8C|1|2A|G|1971
4Z8C|1|2A|U|1972
4Z8C|1|2A|A|1973
4Z8C|1|2A|A|1974
4Z8C|1|2A|G|1975
4Z8C|1|2A|U|1976
4Z8C|1|2A|U|1977
4Z8C|1|2A|C|1978

Current chains

Chain 2A

23S ribosomal RNA

Nearby chains

Chain 2O

50S ribosomal protein L14

Chain 2a

Small subunit ribosomal RNA; SSU rRNA