HL_4Z8C_187

3D structure

PDB id

4Z8C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome bound to translation inhibitor oncocin

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CAGCCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4Z8C_187 not in the Motif Atlas

Geometric match to HL_4WF9_003

Geometric discrepancy: 0.2663

The information below is about HL_4WF9_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

4Z8C|1|2a|C|506
4Z8C|1|2a|A|507
4Z8C|1|2a|G|508
4Z8C|1|2a|C|509
4Z8C|1|2a|C|510
4Z8C|1|2a|G|511

Current chains

Chain 2a

16S ribosomal RNA

Nearby chains

Chain 2l

30S ribosomal protein S12