HL_4Z8C_211

3D structure

PDB id

4Z8C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome bound to translation inhibitor oncocin

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GGCGCAAGCC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4Z8C_211 not in the Motif Atlas

Geometric match to HL_8KAL_008

Geometric discrepancy: 0.299

The information below is about HL_8KAL_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

4Z8C|1|1a|G|373
4Z8C|1|1a|G|374
4Z8C|1|1a|C|375
4Z8C|1|1a|G|376
4Z8C|1|1a|C|377
4Z8C|1|1a|A|378
4Z8C|1|1a|A|379
4Z8C|1|1a|G|380
4Z8C|1|1a|C|381
4Z8C|1|1a|C|382

Current chains

Chain 1a

16S ribosomal RNA

Nearby chains

Chain 1p

30S ribosomal protein S16