HL_4Z8C_214

3D structure

PDB id

4Z8C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome bound to translation inhibitor oncocin

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GCUUAGAAGCAGCC

Length

14 nucleotides

Bulged bases

4Z8C|1|2A|A|1115

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4Z8C_214 not in the Motif Atlas

Homologous match to HL_7A0S_028

Geometric discrepancy: 0.4306

The information below is about HL_7A0S_028

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_63355.1

Basepair signature

cWW-F-F-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

1

Unit IDs

4Z8C|1|2A|G|1108
4Z8C|1|2A|C|1109
4Z8C|1|2A|U|1110
4Z8C|1|2A|U|1111
4Z8C|1|2A|A|1112
4Z8C|1|2A|G|1113
4Z8C|1|2A|A|1114
4Z8C|1|2A|A|1115
4Z8C|1|2A|G|1116
4Z8C|1|2A|C|1117
4Z8C|1|2A|A|1118
4Z8C|1|2A|G|1119
4Z8C|1|2A|C|1120
4Z8C|1|2A|C|1121

Current chains

Chain 2A

23S ribosomal RNA

Nearby chains

Chain 2Q

50S ribosomal protein L16

Chain 2Z

50S ribosomal protein L25