HL_4ZER_024

3D structure

PDB id

4ZER (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Onc112 antimicrobial peptide bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UUUAGG

Length

6 nucleotides

Bulged bases

4ZER|1|1A|U|874, 4ZER|1|1A|G|877

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4ZER_024 not in the Motif Atlas

Homologous match to HL_4WF9_025

Geometric discrepancy: 0.0579

The information below is about HL_4WF9_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27530.1

Basepair signature

cWW-F-F

Number of instances in this motif group

10

Unit IDs

4ZER|1|1A|U|873
4ZER|1|1A|U|874
4ZER|1|1A|U|875
4ZER|1|1A|A|876
4ZER|1|1A|G|877
4ZER|1|1A|G|878

Current chains

Chain 1A

23s ribosomal RNA

Nearby chains

Chain 1P

50S ribosomal protein L15