HL_4ZER_034

3D structure

PDB id

4ZER (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Onc112 antimicrobial peptide bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GUUAAUAUUC

Length

10 nucleotides

Bulged bases

4ZER|1|1A|U|1442, 4ZER|1|1A|U|1443

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4ZER_034 not in the Motif Atlas

Homologous match to HL_7RQB_036

Geometric discrepancy: 0.0643

The information below is about HL_7RQB_036

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69023.2

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

4ZER|1|1A|G|1435
4ZER|1|1A|U|1436
4ZER|1|1A|U|1437
4ZER|1|1A|A|1438
4ZER|1|1A|A|1439
4ZER|1|1A|U|1440
4ZER|1|1A|A|1441
4ZER|1|1A|U|1442
4ZER|1|1A|U|1443
4ZER|1|1A|C|1444

Current chains

Chain 1A

23s ribosomal RNA

Nearby chains

Chain 1X

50S ribosomal protein L23