HL_4ZER_051
3D structure
- PDB id
- 4ZER (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Onc112 antimicrobial peptide bound to the Thermus thermophilus 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- CUG(OMG)GGCGG
- Length
- 9 nucleotides
- Bulged bases
- 4ZER|1|1A|G|2262
- QA status
- Modified nucleotides: OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4ZER_051 not in the Motif Atlas
- Homologous match to HL_7RQB_053
- Geometric discrepancy: 0.0858
- The information below is about HL_7RQB_053
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4ZER|1|1A|C|2260
4ZER|1|1A|U|2261
4ZER|1|1A|G|2262
4ZER|1|1A|OMG|2263
4ZER|1|1A|G|2264
4ZER|1|1A|G|2265
4ZER|1|1A|C|2266
4ZER|1|1A|G|2267
4ZER|1|1A|G|2268
Current chains
- Chain 1A
- 23s ribosomal RNA
Nearby chains
- Chain 10
- 50S ribosomal protein L27
- Chain 1Q
- 50S ribosomal protein L16
- Chain 1x
- Transfer RNA; tRNA
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