HL_4ZER_053

3D structure

PDB id

4ZER (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Onc112 antimicrobial peptide bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGACGGAAAUC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4ZER_053 not in the Motif Atlas

Homologous match to HL_7RQB_055

Geometric discrepancy: 0.09

The information below is about HL_7RQB_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11805.3

Basepair signature

cWW-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

4ZER|1|1A|G|2315
4ZER|1|1A|G|2316
4ZER|1|1A|A|2317
4ZER|1|1A|C|2318
4ZER|1|1A|G|2319
4ZER|1|1A|G|2320
4ZER|1|1A|A|2321
4ZER|1|1A|A|2322
4ZER|1|1A|A|2323
4ZER|1|1A|U|2324
4ZER|1|1A|C|2325

Current chains

Chain 1A

23s ribosomal RNA

Nearby chains

Chain 1B

5S ribosomal RNA; 5S rRNA

Chain 1G

50S ribosomal protein L5