3D structure

PDB id
4ZER (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Onc112 antimicrobial peptide bound to the Thermus thermophilus 70S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
CACUGAGACACGGG
Length
14 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_4ZER_077 not in the Motif Atlas
Homologous match to HL_4LFB_008
Geometric discrepancy: 0.0831
The information below is about HL_4LFB_008
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_39665.1
Basepair signature
cWW-cWW-tWH-F-tWH-F-F-F-F-F
Number of instances in this motif group
2

Unit IDs

4ZER|1|1a|C|320
4ZER|1|1a|A|321
4ZER|1|1a|C|322
4ZER|1|1a|U|323
4ZER|1|1a|G|324
4ZER|1|1a|A|325
4ZER|1|1a|G|326
4ZER|1|1a|A|327
4ZER|1|1a|C|328
4ZER|1|1a|A|329
4ZER|1|1a|C|330
4ZER|1|1a|G|331
4ZER|1|1a|G|332
4ZER|1|1a|G|333

Current chains

Chain 1a
16s ribosomal RNA

Nearby chains

Chain 1p
30S ribosomal protein S16
Chain 1t
30S ribosomal protein S20

Coloring options:


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