HL_4ZER_078

3D structure

PDB id

4ZER (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Onc112 antimicrobial peptide bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CUACGG

Length

6 nucleotides

Bulged bases

4ZER|1|1a|A|344

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4ZER_078 not in the Motif Atlas

Homologous match to HL_6CZR_080

Geometric discrepancy: 0.316

The information below is about HL_6CZR_080

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.4

Basepair signature

cWW-tSW-F

Number of instances in this motif group

58

Unit IDs

4ZER|1|1a|C|342
4ZER|1|1a|U|343
4ZER|1|1a|A|344
4ZER|1|1a|C|345
4ZER|1|1a|G|346
4ZER|1|1a|G|347

Current chains

Chain 1a

16s ribosomal RNA

Nearby chains

Chain 1O

50S ribosomal protein L14

Chain 1T

50S ribosomal protein L19