HL_4ZER_088

3D structure

PDB id

4ZER (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Onc112 antimicrobial peptide bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CUAACG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4ZER_088 not in the Motif Atlas

Homologous match to HL_4LFB_019

Geometric discrepancy: 0.0731

The information below is about HL_4LFB_019

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

335

Unit IDs

4ZER|1|1a|C|862
4ZER|1|1a|U|863
4ZER|1|1a|A|864
4ZER|1|1a|A|865
4ZER|1|1a|C|866
4ZER|1|1a|G|867

Current chains

Chain 1a

16s ribosomal RNA

Nearby chains

Chain 1e

30S ribosomal protein S5

Chain 1h

30S ribosomal protein S8