HL_4ZER_113

3D structure

PDB id

4ZER (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Onc112 antimicrobial peptide bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GCUUGUC

Length

7 nucleotides

Bulged bases

4ZER|1|2A|U|271|||N

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4ZER_113 not in the Motif Atlas

Homologous match to IL_7RQB_008

Geometric discrepancy: 0.1689

The information below is about IL_7RQB_008

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.16

Basepair signature

cWW-L-cWW

Number of instances in this motif group

116

Unit IDs

4ZER|1|2A|G|271|||I
4ZER|1|2A|C|271|||J
4ZER|1|2A|U|271|||K
4ZER|1|2A|U|271|||L
4ZER|1|2A|G|271|||M
4ZER|1|2A|U|271|||N
4ZER|1|2A|C|271|||O

Current chains

Chain 2A

23s ribosomal RNA

Nearby chains

Chain 21

50S ribosomal protein L28

Chain 2I

50S ribosomal protein L9