HL_4ZER_133

3D structure

PDB id

4ZER (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Onc112 antimicrobial peptide bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGUGGCUUAGAAGCAGCCAUCC

Length

22 nucleotides

Bulged bases

4ZER|1|2A|G|1068, 4ZER|1|2A|A|1070, 4ZER|1|2A|G|1071, 4ZER|1|2A|C|1072

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4ZER|1|2A|G|1058
4ZER|1|2A|G|1059
4ZER|1|2A|U|1060
4ZER|1|2A|G|1062
4ZER|1|2A|G|1063
4ZER|1|2A|C|1064
4ZER|1|2A|U|1065
4ZER|1|2A|U|1066
4ZER|1|2A|A|1067
4ZER|1|2A|G|1068
4ZER|1|2A|A|1069
4ZER|1|2A|A|1070
4ZER|1|2A|G|1071
4ZER|1|2A|C|1072
4ZER|1|2A|A|1073
4ZER|1|2A|G|1074
4ZER|1|2A|C|1075
4ZER|1|2A|C|1076
4ZER|1|2A|A|1077
4ZER|1|2A|U|1078
4ZER|1|2A|C|1079
4ZER|1|2A|C|1080

Current chains

Chain 2A

23s ribosomal RNA

Nearby chains

Chain 2Q

50S ribosomal protein L16

Chain 2Z

50S ribosomal protein L25