HL_4ZER_135

3D structure

PDB id

4ZER (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Onc112 antimicrobial peptide bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGCGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4ZER_135 not in the Motif Atlas

Homologous match to HL_7RQB_032

Geometric discrepancy: 0.0948

The information below is about HL_7RQB_032

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_35490.2

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

299

Unit IDs

4ZER|1|2A|C|1222
4ZER|1|2A|G|1223
4ZER|1|2A|C|1224
4ZER|1|2A|G|1225
4ZER|1|2A|A|1226
4ZER|1|2A|G|1227

Current chains

Chain 2A

23s ribosomal RNA

Nearby chains

Chain 2U

50S ribosomal protein L20

Chain 2V

50S ribosomal protein L21