HL_4ZER_139

3D structure

PDB id

4ZER (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Onc112 antimicrobial peptide bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GUUAAUAUUC

Length

10 nucleotides

Bulged bases

4ZER|1|2A|U|1396, 4ZER|1|2A|U|1397

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4ZER_139 not in the Motif Atlas

Homologous match to HL_7RQB_036

Geometric discrepancy: 0.089

The information below is about HL_7RQB_036

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69023.2

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

4ZER|1|2A|G|1389
4ZER|1|2A|U|1390
4ZER|1|2A|U|1391
4ZER|1|2A|A|1392
4ZER|1|2A|A|1393
4ZER|1|2A|U|1394
4ZER|1|2A|A|1395
4ZER|1|2A|U|1396
4ZER|1|2A|U|1397
4ZER|1|2A|C|1398

Current chains

Chain 2A

23s ribosomal RNA

Nearby chains

Chain 2X

50S ribosomal protein L23