HL_4ZER_159

3D structure

PDB id

4ZER (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Onc112 antimicrobial peptide bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGACGGAAAUC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4ZER_159 not in the Motif Atlas

Homologous match to HL_7RQB_055

Geometric discrepancy: 0.1384

The information below is about HL_7RQB_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11805.3

Basepair signature

cWW-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

4ZER|1|2A|G|2303
4ZER|1|2A|G|2304
4ZER|1|2A|A|2305
4ZER|1|2A|C|2306
4ZER|1|2A|G|2307
4ZER|1|2A|G|2308
4ZER|1|2A|A|2309
4ZER|1|2A|A|2310
4ZER|1|2A|A|2311
4ZER|1|2A|U|2312
4ZER|1|2A|C|2313

Current chains

Chain 2A

23s ribosomal RNA

Nearby chains

Chain 2B

5S ribosomal RNA; 5S rRNA

Chain 2G

50S ribosomal protein L5