HL_4ZER_188

3D structure

PDB id

4ZER (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Onc112 antimicrobial peptide bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GCAGCC(G7M)C

Length

8 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: G7M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4ZER_188 not in the Motif Atlas

Geometric match to HL_2Y9H_003

Geometric discrepancy: 0.2902

The information below is about HL_2Y9H_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.6

Basepair signature

cWW-F

Number of instances in this motif group

21

Unit IDs

4ZER|1|2a|G|521
4ZER|1|2a|C|522
4ZER|1|2a|A|523
4ZER|1|2a|G|524
4ZER|1|2a|C|525
4ZER|1|2a|C|526
4ZER|1|2a|G7M|527
4ZER|1|2a|C|528

Current chains

Chain 2a

16s ribosomal RNA

Nearby chains

Chain 2l

30S ribosomal protein S12