HL_4ZER_219

3D structure

PDB id

4ZER (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Onc112 antimicrobial peptide bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGUUCGGCC

Length

9 nucleotides

Bulged bases

4ZER|1|2a|U|1136

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4ZER|1|2a|G|1133
4ZER|1|2a|G|1134
4ZER|1|2a|U|1135
4ZER|1|2a|U|1136
4ZER|1|2a|C|1137
4ZER|1|2a|G|1138
4ZER|1|2a|G|1139
4ZER|1|2a|C|1140
4ZER|1|2a|C|1141

Current chains

Chain 2a

16s ribosomal RNA

Nearby chains