HL_5A2Q_003

3D structure

PDB id

5A2Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES bound to the human ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GUAAUUC

Length

7 nucleotides

Bulged bases

5A2Q|1|2|U|160, 5A2Q|1|2|U|161

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_30528.1

Basepair signature

cWW-tSH-R-R

Number of instances in this motif group

400

Unit IDs

5A2Q|1|2|G|156
5A2Q|1|2|U|157
5A2Q|1|2|A|158
5A2Q|1|2|A|159
5A2Q|1|2|U|160
5A2Q|1|2|U|161
5A2Q|1|2|C|162

Current chains

Chain 2

18S RRNA

Nearby chains

Chain G

RIBOSOMAL PROTEIN ES6

Chain Y

RIBOSOMAL PROTEIN ES24