HL_5A2Q_008

3D structure

PDB id

5A2Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES bound to the human ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CCUGAGAAACGG

Length

12 nucleotides

Bulged bases

5A2Q|1|2|C|450, 5A2Q|1|2|G|451

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_61729.1

Basepair signature

cWW-tWH-tHS-tWH-R-R-R

Number of instances in this motif group

6

Unit IDs

5A2Q|1|2|C|441
5A2Q|1|2|C|442
5A2Q|1|2|U|443
5A2Q|1|2|G|444
5A2Q|1|2|A|445
5A2Q|1|2|G|446
5A2Q|1|2|A|447
5A2Q|1|2|A|448
5A2Q|1|2|A|449
5A2Q|1|2|C|450
5A2Q|1|2|G|451
5A2Q|1|2|G|452

Current chains

Chain 2

18S RRNA

Nearby chains

Chain E

RIBOSOMAL PROTEIN ES4

Chain G

RIBOSOMAL PROTEIN ES6

Chain I

RIBOSOMAL PROTEIN ES8

Chain Y

RIBOSOMAL PROTEIN ES24