HL_5A2Q_016

3D structure

PDB id

5A2Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES bound to the human ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UAUUUUGUUGGUUUUCG

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71221.1

Basepair signature

cWW-cWW-R-R-R-R-R-R-R-R-R-R-R-R

Number of instances in this motif group

5

Unit IDs

5A2Q|1|2|U|885
5A2Q|1|2|A|886
5A2Q|1|2|U|887
5A2Q|1|2|U|888
5A2Q|1|2|U|889
5A2Q|1|2|U|890
5A2Q|1|2|G|891
5A2Q|1|2|U|892
5A2Q|1|2|U|893
5A2Q|1|2|G|894
5A2Q|1|2|G|895
5A2Q|1|2|U|896
5A2Q|1|2|U|897
5A2Q|1|2|U|898
5A2Q|1|2|U|899
5A2Q|1|2|C|900
5A2Q|1|2|G|901

Current chains

Chain 2

18S RRNA

Nearby chains