HL_5A2Q_035

3D structure

PDB id

5A2Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES bound to the human ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UGUUGGGUCG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_03642.1

Basepair signature

cWW-R-R-R-R-R-R-R

Number of instances in this motif group

1

Unit IDs

5A2Q|1|3|U|262
5A2Q|1|3|G|263
5A2Q|1|3|U|264
5A2Q|1|3|U|265
5A2Q|1|3|G|266
5A2Q|1|3|G|267
5A2Q|1|3|G|268
5A2Q|1|3|U|269
5A2Q|1|3|C|270
5A2Q|1|3|G|271

Current chains

Chain 3

HCV IRES

Nearby chains

Chain 2

Small subunit ribosomal RNA; SSU rRNA

Chain B

RIBOSOMAL PROTEIN ES1

Chain b

RIBOSOMAL PROTEIN ES27