HL_5A2Q_039
3D structure
- PDB id
- 5A2Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the HCV IRES bound to the human ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- AUUGCAAUUAUU
- Length
- 12 nucleotides
- Bulged bases
- 5A2Q|1|2|U|1621, 5A2Q|1|2|U|1622, 5A2Q|1|2|A|1623
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5A2Q_039 not in the Motif Atlas
- Homologous match to HL_8P9A_222
- Geometric discrepancy: 0.1967
- The information below is about HL_8P9A_222
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_67079.1
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
5A2Q|1|2|A|1614
5A2Q|1|2|U|1615
5A2Q|1|2|U|1616
5A2Q|1|2|G|1617
5A2Q|1|2|C|1618
5A2Q|1|2|A|1619
5A2Q|1|2|A|1620
5A2Q|1|2|U|1621
5A2Q|1|2|U|1622
5A2Q|1|2|A|1623
5A2Q|1|2|U|1624
5A2Q|1|2|U|1625
Current chains
- Chain 2
- 18S RRNA
Nearby chains
- Chain P
- RIBOSOMAL PROTEIN US19
- Chain S
- RIBOSOMAL PROTEIN US13
- Chain T
- RIBOSOMAL PROTEIN ES19
- Chain d
- RIBOSOMAL PROTEIN US14
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