HL_5A9Z_023
3D structure
- PDB id
- 5A9Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of Thermous thermophilus ribosome bound to BipA-GDPCP
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.7 Å
Loop
- Sequence
- GGAUGCAAAC
- Length
- 10 nucleotides
- Bulged bases
- 5A9Z|1|AA|U|747||||P_1, 5A9Z|1|AA|A|751||||P_1
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5A9Z_023 not in the Motif Atlas
- Homologous match to HL_7A0S_022
- Geometric discrepancy: 0.3794
- The information below is about HL_7A0S_022
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_50204.1
- Basepair signature
- cWW-cWS-tSW-F-F
- Number of instances in this motif group
- 11
Unit IDs
5A9Z|1|AA|G|744||||P_1
5A9Z|1|AA|G|745||||P_1
5A9Z|1|AA|A|746||||P_1
5A9Z|1|AA|U|747||||P_1
5A9Z|1|AA|G|748||||P_1
5A9Z|1|AA|C|749||||P_1
5A9Z|1|AA|A|750||||P_1
5A9Z|1|AA|A|751||||P_1
5A9Z|1|AA|A|752||||P_1
5A9Z|1|AA|C|753||||P_1
Current chains
- Chain AA
- 23S ribosomal RNA
Nearby chains
- Chain AE
- 50S ribosomal protein L3
- Chain AT
- 50S ribosomal protein L22
- Chain Ab
- 50S ribosomal protein L32
- Chain Ad
- 50S ribosomal protein L34
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