Loop HL_5A9Z

3D structure

PDB id: 5A9Z (explore in PDB, NAKB, or RNA 3D Hub)
Description: Complex of Thermous thermophilus ribosome bound to BipA-GDPCP
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.7 Å

Loop

Sequence: AGGGCUAGGGGGCCCACCAGCCUACCAAACCCU
Length: 33 nucleotides
Bulged bases: 5A9Z|1|AA|G|883||||P_1, 5A9Z|1|AA|C|884||||P_1, 5A9Z|1|AA|C|885||||P_1, 5A9Z|1|AA|C|886||||P_1, 5A9Z|1|AA|A|887||||P_1, 5A9Z|1|AA|C|888||||P_1
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

5A9Z|1|AA|A|872||||P_1
5A9Z|1|AA|G|873||||P_1
5A9Z|1|AA|G|874||||P_1
5A9Z|1|AA|G|875||||P_1
5A9Z|1|AA|C|876||||P_1
5A9Z|1|AA|U|877||||P_1
5A9Z|1|AA|A|878||||P_1
5A9Z|1|AA|G|879||||P_1
5A9Z|1|AA|G|880||||P_1
5A9Z|1|AA|G|881||||P_1
5A9Z|1|AA|G|882||||P_1
5A9Z|1|AA|G|883||||P_1
5A9Z|1|AA|C|884||||P_1
5A9Z|1|AA|C|885||||P_1
5A9Z|1|AA|C|886||||P_1
5A9Z|1|AA|A|887||||P_1
5A9Z|1|AA|C|888||||P_1
5A9Z|1|AA|C|889||||P_1
5A9Z|1|AA|A|890||||P_1
5A9Z|1|AA|G|892||||P_1
5A9Z|1|AA|C|893||||P_1
5A9Z|1|AA|C|894||||P_1
5A9Z|1|AA|U|895||||P_1
5A9Z|1|AA|A|896||||P_1
5A9Z|1|AA|C|897||||P_1
5A9Z|1|AA|C|898||||P_1
5A9Z|1|AA|A|899||||P_1
5A9Z|1|AA|A|900||||P_1
5A9Z|1|AA|A|901||||P_1
5A9Z|1|AA|C|902||||P_1
5A9Z|1|AA|C|903||||P_1
5A9Z|1|AA|C|904||||P_1
5A9Z|1|AA|U|905||||P_1

Current chains

Chain AA: 23S ribosomal RNA

Nearby chains

Chain AG: 50S ribosomal protein L5
Chain AN: 50S ribosomal protein L16
Chain AW: 50S ribosomal protein L25
Chain BQ: 30S ribosomal protein S13
Chain BW: 30S ribosomal protein S19

HL_5A9Z_104