HL_5AA0_012

3D structure

PDB id

5AA0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of Thermous thermophilus ribosome (A-and P-site tRNA) bound to BipA-GDPCP

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

GUGAAAGCC

Length

9 nucleotides

Bulged bases

5AA0|1|AA|G|329||||P_1, 5AA0|1|AA|A|330||||P_1, 5AA0|1|AA|A|331||||P_1

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5AA0_012 not in the Motif Atlas

Geometric match to HL_4WF9_012

Geometric discrepancy: 0.3621

The information below is about HL_4WF9_012

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.2

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

13

Unit IDs

5AA0|1|AA|G|327||||P_1
5AA0|1|AA|U|328||||P_1
5AA0|1|AA|G|329||||P_1
5AA0|1|AA|A|330||||P_1
5AA0|1|AA|A|331||||P_1
5AA0|1|AA|A|332||||P_1
5AA0|1|AA|G|333||||P_1
5AA0|1|AA|C|334||||P_1
5AA0|1|AA|C|335||||P_1

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain AF

50S ribosomal protein L4

Chain AV

50S ribosomal protein L24